STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB33BRAB33B, member RAS oncogene family. (228 aa)    
Predicted Functional Partners:
ATG16L1
Autophagy related 16 like 1.
    
 0.996
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.871
GDI2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.822
TRAPPC8
Uncharacterized protein.
    
 0.812
TRAPPC1
Trafficking protein particle complex 1.
    
 0.808
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.795
TRAPPC6B
Trafficking protein particle complex 6B.
   
 0.793
RAB33A
RAB33A, member RAS oncogene family.
  
 
 
0.790
H0ZD04_TAEGU
Uncharacterized protein.
    
 0.786
TRAPPC5
Trafficking protein particle complex subunit 5.
    
 0.784
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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