STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USH1CHarmonin isoform X1. (556 aa)    
Predicted Functional Partners:
USH1G
USH1 protein network component sans.
    
 0.991
ANKS4B
Ankyrin repeat and sterile alpha motif domain containing 4B.
    
 0.960
CDH23
Cadherin related 23.
   
 
 0.854
MYO7A
Myosin VIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.794
CDHR2
Cadherin related family member 2.
   
 
 0.764
CLRN1
Clarin 1.
      
 0.764
ENSTGUP00000035888
annotation not available
   
 
 0.764
PCDH15
Protocadherin related 15.
   
 
 0.759
USH2A
Usherin.
    
 
 0.758
ZNF536
Zinc finger protein 536.
    
 
 0.719
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.