STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC42EP3CDC42 effector protein 3. (255 aa)    
Predicted Functional Partners:
RHOJ
Ras homolog family member J.
    
 0.697
SEPTIN7
Septin 7; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
    
 0.661
SKP1
S-phase kinase associated protein 1; Belongs to the SKP1 family.
      
 0.641
CDC42
Cell division cycle 42.
    
 0.628
RHOH
Ras homolog family member H.
    
 0.592
TMEM51
Transmembrane protein 51.
      
 0.556
CDC42EP1
CDC42 effector protein 1.
     
0.521
CDC42EP4
CDC42 effector protein 4.
     
0.521
MAPKAPK5
MAPK activated protein kinase 5.
   
 
  0.433
GJA4
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
  
  
  0.420
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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