STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM53Transmembrane protein 53. (336 aa)    
Predicted Functional Partners:
ACBD6
Acyl-CoA binding domain containing 6.
      
 0.576
ASPHD2
Aspartate beta-hydroxylase domain containing 2.
      
 0.576
B3GLCT
Beta 3-glucosyltransferase.
      
 0.574
XRCC3
DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily.
      
 0.540
PAX6
Paired box 6.
      
 0.529
TMEM147
Transmembrane protein 147.
      
 0.528
ERI3
ERI1 exoribonuclease family member 3.
      
 0.521
RNF220
Ring finger protein 220.
      
 0.519
NME7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
      
 0.511
DMAP1
DNA methyltransferase 1 associated protein 1.
      
 0.503
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.