STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE2SDE2 telomere maintenance homolog. (451 aa)    
Predicted Functional Partners:
CDC40
Cell division cycle 40.
    
 0.958
NKAP
NFKB activating protein.
    
 0.887
SYF2
Pre-mRNA-splicing factor SYF2.
    
  0.887
SLU7
SLU7 homolog, splicing factor.
    
 0.883
LOC105760436
pre-mRNA-splicing factor SLU7-like.
    
 0.883
PRPF19
Pre-mRNA processing factor 19.
    
 
 0.882
WDR25
WD repeat domain 25.
    
 0.874
CWC22
MI domain-containing protein.
    
  0.870
BUD31
Uncharacterized protein.
    
   0.865
CACTIN
Cactin, spliceosome C complex subunit.
    
 0.863
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.