STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN85654.1Hypothetical protein. (215 aa)    
Predicted Functional Partners:
SIO33936.1
Helix-turn-helix domain-containing protein.
  
     0.657
SIO33944.1
Hypothetical protein.
  
     0.649
SIN85665.1
NlpC/P60 family protein.
       0.520
SIO33926.1
RteC protein.
  
     0.496
SIO17995.1
TonB-dependent Receptor Plug Domain.
  
     0.406
SIN85678.1
Protein-S-isoprenylcysteine O-methyltransferase Ste14.
       0.402
Your Current Organism:
Chryseobacterium scophthalmum
NCBI taxonomy Id: 59733
Other names: ATCC 700039, C. scophthalmum, CCM 4109, CCUG 33454, CIP 104199, DSM 16779, Flavobacterium scophthalmum, LMG 13028, LMG:13028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.