node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplC | rplD | SAMN05421769_2872 | SAMN05421769_2873 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplI | SAMN05421769_2872 | SAMN05421769_0922 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.992 |
rplC | rplJ | SAMN05421769_2872 | SAMN05421769_3819 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rplC | rplS | SAMN05421769_2872 | SAMN05421769_3321 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.991 |
rplC | rplT | SAMN05421769_2872 | SAMN05421769_0642 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.992 |
rplC | rplU | SAMN05421769_2872 | SAMN05421769_2274 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
rplC | rplX | SAMN05421769_2872 | SAMN05421769_2883 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
rplC | rpmA | SAMN05421769_2872 | SAMN05421769_2275 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.994 |
rplC | rpsI | SAMN05421769_2872 | SAMN05421769_3971 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.995 |
rplC | rpsO | SAMN05421769_2872 | SAMN05421769_1578 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.993 |
rplD | rplC | SAMN05421769_2873 | SAMN05421769_2872 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
rplD | rplI | SAMN05421769_2873 | SAMN05421769_0922 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.992 |
rplD | rplJ | SAMN05421769_2873 | SAMN05421769_3819 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rplD | rplS | SAMN05421769_2873 | SAMN05421769_3321 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.992 |
rplD | rplT | SAMN05421769_2873 | SAMN05421769_0642 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.994 |
rplD | rplU | SAMN05421769_2873 | SAMN05421769_2274 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
rplD | rplX | SAMN05421769_2873 | SAMN05421769_2883 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
rplD | rpmA | SAMN05421769_2873 | SAMN05421769_2275 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.991 |
rplD | rpsI | SAMN05421769_2873 | SAMN05421769_3971 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.994 |
rplD | rpsO | SAMN05421769_2873 | SAMN05421769_1578 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |