STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO38821.12-dehydro-3-deoxygluconokinase. (334 aa)    
Predicted Functional Partners:
SIO38833.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
 
 0.995
SIO38862.1
Altronate hydrolase.
 
 
 0.966
SIN87144.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.900
uxaC
D-glucuronate isomerase.
 
   
 0.870
SIO38850.1
Tagaturonate reductase.
 
  
 0.840
SIO38805.1
Gluconate 5-dehydrogenase.
 
  0.826
SIO38842.1
MFS transporter, ACS family, hexuronate transporter.
 
   
 0.761
SIN83111.1
D-psicose/D-tagatose/L-ribulose 3-epimerase.
 
 
 0.738
SIO28518.1
Predicted dehydrogenase.
  
 
 0.734
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.676
Your Current Organism:
Chryseobacterium scophthalmum
NCBI taxonomy Id: 59733
Other names: ATCC 700039, C. scophthalmum, CCM 4109, CCUG 33454, CIP 104199, DSM 16779, Flavobacterium scophthalmum, LMG 13028, LMG:13028
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