Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIN87050.1 | SIN96770.1 | SAMN05421769_0741 | SAMN05421769_1454 | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | Hypothetical protein. | 0.997 |
SIN87050.1 | SIO05318.1 | SAMN05421769_0741 | SAMN05421769_2055 | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | Molecular chaperone HtpG. | 0.997 |
SIN87050.1 | SIO33770.1 | SAMN05421769_0741 | SAMN05421769_3636 | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | Thioredoxin. | 0.828 |
SIN87050.1 | dnaK | SAMN05421769_0741 | SAMN05421769_1379 | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.988 |
SIN87050.1 | groL | SAMN05421769_0741 | SAMN05421769_4125 | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.573 |
SIN87050.1 | groS | SAMN05421769_0741 | SAMN05421769_4126 | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.729 |
SIN87050.1 | grpE | SAMN05421769_0741 | SAMN05421769_3268 | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.439 |
SIN94826.1 | SIN96770.1 | SAMN05421769_1317 | SAMN05421769_1454 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Hypothetical protein. | 0.587 |
SIN94826.1 | SIO05318.1 | SAMN05421769_1317 | SAMN05421769_2055 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Molecular chaperone HtpG. | 0.587 |
SIN94826.1 | clpP | SAMN05421769_1317 | SAMN05421769_3399 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.940 |
SIN94826.1 | dnaK | SAMN05421769_1317 | SAMN05421769_1379 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.961 |
SIN94826.1 | groL | SAMN05421769_1317 | SAMN05421769_4125 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.698 |
SIN94826.1 | groS | SAMN05421769_1317 | SAMN05421769_4126 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.703 |
SIN94826.1 | grpE | SAMN05421769_1317 | SAMN05421769_3268 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.740 |
SIN96770.1 | SIN87050.1 | SAMN05421769_1454 | SAMN05421769_0741 | Hypothetical protein. | Peptidyl-prolyl cis-trans isomerase A (cyclophilin A). | 0.997 |
SIN96770.1 | SIN94826.1 | SAMN05421769_1454 | SAMN05421769_1317 | Hypothetical protein. | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | 0.587 |
SIN96770.1 | SIO33770.1 | SAMN05421769_1454 | SAMN05421769_3636 | Hypothetical protein. | Thioredoxin. | 0.436 |
SIN96770.1 | dnaK | SAMN05421769_1454 | SAMN05421769_1379 | Hypothetical protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.983 |
SIN96770.1 | groL | SAMN05421769_1454 | SAMN05421769_4125 | Hypothetical protein. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.823 |
SIN96770.1 | groS | SAMN05421769_1454 | SAMN05421769_4126 | Hypothetical protein. | Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.686 |
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