K5WYN1_AGABU protein (Agaricus bisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K5WYN1_AGABU

Uncharacterized protein. (878 aa)

Predicted Functional Partners:

K5XHU5_AGABU

0.999

K5XFG9_AGABU

0.994

K5VMP8_AGABU

0.987

K5XK56_AGABU

0.986

K5XJ52_AGABU

0.984

K5WIS3_AGABU

0.981

K5Y5U5_AGABU

0.981

K5W134_AGABU

0.979

K5Y686_AGABU

0.972

K5WZP3_AGABU

0.962

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5VMP8_AGABU	K5WYN1_AGABU	K5VMP8	K5WYN1	C2H2-type domain-containing protein.	Uncharacterized protein.	0.987
K5VMP8_AGABU	K5XHU5_AGABU	K5VMP8	K5XHU5	C2H2-type domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.993
K5VMP8_AGABU	K5XJ52_AGABU	K5VMP8	K5XJ52	C2H2-type domain-containing protein.	Uncharacterized protein.	0.486
K5VMP8_AGABU	K5XK56_AGABU	K5VMP8	K5XK56	C2H2-type domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.404
K5W134_AGABU	K5WIS3_AGABU	K5W134	K5WIS3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
K5W134_AGABU	K5WYN1_AGABU	K5W134	K5WYN1	Uncharacterized protein.	Uncharacterized protein.	0.979
K5W134_AGABU	K5WZP3_AGABU	K5W134	K5WZP3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.999
K5W134_AGABU	K5XFG9_AGABU	K5W134	K5XFG9	Uncharacterized protein.	Sm domain-containing protein.	0.953
K5W134_AGABU	K5XHU5_AGABU	K5W134	K5XHU5	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.971
K5W134_AGABU	K5XJ52_AGABU	K5W134	K5XJ52	Uncharacterized protein.	Uncharacterized protein.	0.999
K5W134_AGABU	K5XK56_AGABU	K5W134	K5XK56	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
K5W134_AGABU	K5Y5U5_AGABU	K5W134	K5Y5U5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.718
K5W134_AGABU	K5Y686_AGABU	K5W134	K5Y686	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
K5WIS3_AGABU	K5W134_AGABU	K5WIS3	K5W134	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.999
K5WIS3_AGABU	K5WYN1_AGABU	K5WIS3	K5WYN1	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.981
K5WIS3_AGABU	K5WZP3_AGABU	K5WIS3	K5WZP3	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
K5WIS3_AGABU	K5XFG9_AGABU	K5WIS3	K5XFG9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Sm domain-containing protein.	0.999
K5WIS3_AGABU	K5XHU5_AGABU	K5WIS3	K5XHU5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit 2.	0.980
K5WIS3_AGABU	K5XJ52_AGABU	K5WIS3	K5XJ52	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.999
K5WIS3_AGABU	K5XK56_AGABU	K5WIS3	K5XK56	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999