K5X478_AGABU protein (Agaricus bisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K5X478_AGABU

Uncharacterized protein. (820 aa)

Predicted Functional Partners:

K5XC14_AGABU

0.910

K5XIN8_AGABU

0.775

K5WRH6_AGABU

0.708

K5X6Q2_AGABU

0.697

K5X1C2_AGABU

0.683

K5XR96_AGABU

0.625

K5VQK1_AGABU

0.604

K5WAM9_AGABU

0.535

K5X8A4_AGABU

0.530

K5Y5G2_AGABU

0.525

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5VQK1_AGABU	K5WAM9_AGABU	K5VQK1	K5WAM9	Uncharacterized protein.	Uncharacterized protein.	0.640
K5VQK1_AGABU	K5X1C2_AGABU	K5VQK1	K5X1C2	Uncharacterized protein.	Uncharacterized protein.	0.831
K5VQK1_AGABU	K5X478_AGABU	K5VQK1	K5X478	Uncharacterized protein.	Uncharacterized protein.	0.604
K5VQK1_AGABU	K5X6Q2_AGABU	K5VQK1	K5X6Q2	Uncharacterized protein.	Rad51 domain-containing protein.	0.869
K5VQK1_AGABU	K5XC14_AGABU	K5VQK1	K5XC14	Uncharacterized protein.	Uncharacterized protein.	0.604
K5VQK1_AGABU	K5XIN8_AGABU	K5VQK1	K5XIN8	Uncharacterized protein.	Uncharacterized protein.	0.671
K5VQK1_AGABU	K5XR96_AGABU	K5VQK1	K5XR96	Uncharacterized protein.	Uncharacterized protein.	0.885
K5WAM9_AGABU	K5VQK1_AGABU	K5WAM9	K5VQK1	Uncharacterized protein.	Uncharacterized protein.	0.640
K5WAM9_AGABU	K5X478_AGABU	K5WAM9	K5X478	Uncharacterized protein.	Uncharacterized protein.	0.535
K5WAM9_AGABU	K5X8A4_AGABU	K5WAM9	K5X8A4	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.629
K5WAM9_AGABU	K5XC14_AGABU	K5WAM9	K5XC14	Uncharacterized protein.	Uncharacterized protein.	0.537
K5WAM9_AGABU	K5XIN8_AGABU	K5WAM9	K5XIN8	Uncharacterized protein.	Uncharacterized protein.	0.919
K5WAM9_AGABU	K5XR96_AGABU	K5WAM9	K5XR96	Uncharacterized protein.	Uncharacterized protein.	0.818
K5WAM9_AGABU	K5Y5G2_AGABU	K5WAM9	K5Y5G2	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.597
K5WRH6_AGABU	K5X478_AGABU	K5WRH6	K5X478	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.708
K5X1C2_AGABU	K5VQK1_AGABU	K5X1C2	K5VQK1	Uncharacterized protein.	Uncharacterized protein.	0.831
K5X1C2_AGABU	K5X478_AGABU	K5X1C2	K5X478	Uncharacterized protein.	Uncharacterized protein.	0.683
K5X1C2_AGABU	K5XC14_AGABU	K5X1C2	K5XC14	Uncharacterized protein.	Uncharacterized protein.	0.683
K5X1C2_AGABU	K5XIN8_AGABU	K5X1C2	K5XIN8	Uncharacterized protein.	Uncharacterized protein.	0.876
K5X1C2_AGABU	K5XR96_AGABU	K5X1C2	K5XR96	Uncharacterized protein.	Uncharacterized protein.	0.876