K5X788_AGABU protein (Agaricus bisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K5X788_AGABU

Uncharacterized protein. (358 aa)

Predicted Functional Partners:

K5W0X3_AGABU

0.872

K5XB02_AGABU

0.872

K5XX82_AGABU

0.779

K5XFH3_AGABU

0.548

K5WYQ2_AGABU

0.426

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5W0X3_AGABU	K5WYQ2_AGABU	K5W0X3	K5WYQ2	CCHC-type domain-containing protein.	S4 RNA-binding domain-containing protein.	0.445
K5W0X3_AGABU	K5X788_AGABU	K5W0X3	K5X788	CCHC-type domain-containing protein.	Uncharacterized protein.	0.872
K5W0X3_AGABU	K5XB02_AGABU	K5W0X3	K5XB02	CCHC-type domain-containing protein.	XRN_M domain-containing protein.	0.946
K5W0X3_AGABU	K5XFH3_AGABU	K5W0X3	K5XFH3	CCHC-type domain-containing protein.	CLP1_P domain-containing protein.	0.469
K5WYQ2_AGABU	K5W0X3_AGABU	K5WYQ2	K5W0X3	S4 RNA-binding domain-containing protein.	CCHC-type domain-containing protein.	0.445
K5WYQ2_AGABU	K5X788_AGABU	K5WYQ2	K5X788	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.426
K5WYQ2_AGABU	K5XB02_AGABU	K5WYQ2	K5XB02	S4 RNA-binding domain-containing protein.	XRN_M domain-containing protein.	0.445
K5WYQ2_AGABU	K5XX82_AGABU	K5WYQ2	K5XX82	S4 RNA-binding domain-containing protein.	RNase_PH domain-containing protein.	0.877
K5X788_AGABU	K5W0X3_AGABU	K5X788	K5W0X3	Uncharacterized protein.	CCHC-type domain-containing protein.	0.872
K5X788_AGABU	K5WYQ2_AGABU	K5X788	K5WYQ2	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.426
K5X788_AGABU	K5XB02_AGABU	K5X788	K5XB02	Uncharacterized protein.	XRN_M domain-containing protein.	0.872
K5X788_AGABU	K5XFH3_AGABU	K5X788	K5XFH3	Uncharacterized protein.	CLP1_P domain-containing protein.	0.548
K5X788_AGABU	K5XX82_AGABU	K5X788	K5XX82	Uncharacterized protein.	RNase_PH domain-containing protein.	0.779
K5XB02_AGABU	K5W0X3_AGABU	K5XB02	K5W0X3	XRN_M domain-containing protein.	CCHC-type domain-containing protein.	0.946
K5XB02_AGABU	K5WYQ2_AGABU	K5XB02	K5WYQ2	XRN_M domain-containing protein.	S4 RNA-binding domain-containing protein.	0.445
K5XB02_AGABU	K5X788_AGABU	K5XB02	K5X788	XRN_M domain-containing protein.	Uncharacterized protein.	0.872
K5XB02_AGABU	K5XFH3_AGABU	K5XB02	K5XFH3	XRN_M domain-containing protein.	CLP1_P domain-containing protein.	0.469
K5XFH3_AGABU	K5W0X3_AGABU	K5XFH3	K5W0X3	CLP1_P domain-containing protein.	CCHC-type domain-containing protein.	0.469
K5XFH3_AGABU	K5X788_AGABU	K5XFH3	K5X788	CLP1_P domain-containing protein.	Uncharacterized protein.	0.548
K5XFH3_AGABU	K5XB02_AGABU	K5XFH3	K5XB02	CLP1_P domain-containing protein.	XRN_M domain-containing protein.	0.469