K5XEQ9_AGABU protein (Agaricus bisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K5XEQ9_AGABU

RBR-type E3 ubiquitin transferase. (230 aa)

Predicted Functional Partners:

K5XEW1_AGABU

0.721

K5XAM5_AGABU

0.716

K5Y1J1_AGABU

0.711

K5X9R9_AGABU

0.561

K5VSQ0_AGABU

0.553

K5WPY1_AGABU

0.537

K5X4J8_AGABU

0.537

K5XJP2_AGABU

0.537

K5W040_AGABU

0.518

K5WX04_AGABU

0.518

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5VSQ0_AGABU	K5W040_AGABU	K5VSQ0	K5W040	RING-type domain-containing protein.	Uncharacterized protein.	0.706
K5VSQ0_AGABU	K5WPY1_AGABU	K5VSQ0	K5WPY1	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.686
K5VSQ0_AGABU	K5WX04_AGABU	K5VSQ0	K5WX04	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.706
K5VSQ0_AGABU	K5X4J8_AGABU	K5VSQ0	K5X4J8	RING-type domain-containing protein.	AN1-type domain-containing protein.	0.686
K5VSQ0_AGABU	K5X9R9_AGABU	K5VSQ0	K5X9R9	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.984
K5VSQ0_AGABU	K5XAM5_AGABU	K5VSQ0	K5XAM5	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.839
K5VSQ0_AGABU	K5XEQ9_AGABU	K5VSQ0	K5XEQ9	RING-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.553
K5VSQ0_AGABU	K5XEW1_AGABU	K5VSQ0	K5XEW1	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.915
K5VSQ0_AGABU	K5XJP2_AGABU	K5VSQ0	K5XJP2	RING-type domain-containing protein.	Uncharacterized protein.	0.912
K5W040_AGABU	K5VSQ0_AGABU	K5W040	K5VSQ0	Uncharacterized protein.	RING-type domain-containing protein.	0.706
K5W040_AGABU	K5WPY1_AGABU	K5W040	K5WPY1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.727
K5W040_AGABU	K5X4J8_AGABU	K5W040	K5X4J8	Uncharacterized protein.	AN1-type domain-containing protein.	0.727
K5W040_AGABU	K5X9R9_AGABU	K5W040	K5X9R9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.853
K5W040_AGABU	K5XAM5_AGABU	K5W040	K5XAM5	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.987
K5W040_AGABU	K5XEQ9_AGABU	K5W040	K5XEQ9	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.518
K5W040_AGABU	K5XEW1_AGABU	K5W040	K5XEW1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.954
K5W040_AGABU	K5XJP2_AGABU	K5W040	K5XJP2	Uncharacterized protein.	Uncharacterized protein.	0.894
K5W040_AGABU	K5Y1J1_AGABU	K5W040	K5Y1J1	Uncharacterized protein.	HECT domain-containing protein.	0.706
K5WPY1_AGABU	K5VSQ0_AGABU	K5WPY1	K5VSQ0	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.686
K5WPY1_AGABU	K5W040_AGABU	K5WPY1	K5W040	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.727