K5Y3S3_AGABU protein (Agaricus bisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K5Y3S3_AGABU

GYF domain-containing protein. (412 aa)

Predicted Functional Partners:

K5WUC7_AGABU

0.989

K5X5Q8_AGABU

0.921

K5W7D3_AGABU

0.907

K5XW14_AGABU

0.906

K5XVK4_AGABU

0.888

K5WBE8_AGABU

0.852

K5XFG9_AGABU

0.851

K5XUI7_AGABU

0.818

K5WWB6_AGABU

0.810

K5WI25_AGABU

0.746

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5W7D3_AGABU	K5WBE8_AGABU	K5W7D3	K5WBE8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Tr-type G domain-containing protein.	0.998
K5W7D3_AGABU	K5WI25_AGABU	K5W7D3	K5WI25	Uncharacterized protein; Belongs to the DEAD box helicase family.	Sm domain-containing protein.	0.868
K5W7D3_AGABU	K5WUC7_AGABU	K5W7D3	K5WUC7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.986
K5W7D3_AGABU	K5WWB6_AGABU	K5W7D3	K5WWB6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.946
K5W7D3_AGABU	K5X5Q8_AGABU	K5W7D3	K5X5Q8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.987
K5W7D3_AGABU	K5XFG9_AGABU	K5W7D3	K5XFG9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Sm domain-containing protein.	0.906
K5W7D3_AGABU	K5XUI7_AGABU	K5W7D3	K5XUI7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.958
K5W7D3_AGABU	K5XVK4_AGABU	K5W7D3	K5XVK4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.997
K5W7D3_AGABU	K5XW14_AGABU	K5W7D3	K5XW14	Uncharacterized protein; Belongs to the DEAD box helicase family.	MPN domain-containing protein.	0.999
K5W7D3_AGABU	K5Y3S3_AGABU	K5W7D3	K5Y3S3	Uncharacterized protein; Belongs to the DEAD box helicase family.	GYF domain-containing protein.	0.907
K5WBE8_AGABU	K5W7D3_AGABU	K5WBE8	K5W7D3	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.998
K5WBE8_AGABU	K5WI25_AGABU	K5WBE8	K5WI25	Tr-type G domain-containing protein.	Sm domain-containing protein.	0.936
K5WBE8_AGABU	K5WUC7_AGABU	K5WBE8	K5WUC7	Tr-type G domain-containing protein.	Uncharacterized protein.	0.999
K5WBE8_AGABU	K5WWB6_AGABU	K5WBE8	K5WWB6	Tr-type G domain-containing protein.	Uncharacterized protein.	0.961
K5WBE8_AGABU	K5X5Q8_AGABU	K5WBE8	K5X5Q8	Tr-type G domain-containing protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.997
K5WBE8_AGABU	K5XFG9_AGABU	K5WBE8	K5XFG9	Tr-type G domain-containing protein.	Sm domain-containing protein.	0.996
K5WBE8_AGABU	K5XUI7_AGABU	K5WBE8	K5XUI7	Tr-type G domain-containing protein.	Uncharacterized protein.	0.995
K5WBE8_AGABU	K5XVK4_AGABU	K5WBE8	K5XVK4	Tr-type G domain-containing protein.	Uncharacterized protein.	0.999
K5WBE8_AGABU	K5XW14_AGABU	K5WBE8	K5XW14	Tr-type G domain-containing protein.	MPN domain-containing protein.	0.999
K5WBE8_AGABU	K5Y3S3_AGABU	K5WBE8	K5Y3S3	Tr-type G domain-containing protein.	GYF domain-containing protein.	0.852