K5Y4W0_AGABU protein (Agaricus bisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K5Y4W0_AGABU

ER membrane protein complex subunit 4; Belongs to the EMC4 family. (172 aa)

Predicted Functional Partners:

K5X676_AGABU

0.996

K5VQ91_AGABU

0.995

K5VZ53_AGABU

0.983

K5X772_AGABU

0.963

K5WLP0_AGABU

0.954

K5X150_AGABU

0.954

K5XEE1_AGABU

0.952

K5XVE6_AGABU

0.916

K5X7W5_AGABU

0.863

K5XY53_AGABU

0.509

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5VQ91_AGABU	K5VZ53_AGABU	K5VQ91	K5VZ53	EMC1_C domain-containing protein.	Uncharacterized protein.	0.983
K5VQ91_AGABU	K5X676_AGABU	K5VQ91	K5X676	EMC1_C domain-containing protein.	TPR_REGION domain-containing protein.	0.997
K5VQ91_AGABU	K5X772_AGABU	K5VQ91	K5X772	EMC1_C domain-containing protein.	DUF2012 domain-containing protein.	0.950
K5VQ91_AGABU	K5X7W5_AGABU	K5VQ91	K5X7W5	EMC1_C domain-containing protein.	Uncharacterized protein.	0.910
K5VQ91_AGABU	K5XEE1_AGABU	K5VQ91	K5XEE1	EMC1_C domain-containing protein.	Uncharacterized protein.	0.950
K5VQ91_AGABU	K5XVE6_AGABU	K5VQ91	K5XVE6	EMC1_C domain-containing protein.	MPN domain-containing protein.	0.941
K5VQ91_AGABU	K5Y4W0_AGABU	K5VQ91	K5Y4W0	EMC1_C domain-containing protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.995
K5VZ53_AGABU	K5VQ91_AGABU	K5VZ53	K5VQ91	Uncharacterized protein.	EMC1_C domain-containing protein.	0.983
K5VZ53_AGABU	K5X676_AGABU	K5VZ53	K5X676	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.997
K5VZ53_AGABU	K5X772_AGABU	K5VZ53	K5X772	Uncharacterized protein.	DUF2012 domain-containing protein.	0.933
K5VZ53_AGABU	K5X7W5_AGABU	K5VZ53	K5X7W5	Uncharacterized protein.	Uncharacterized protein.	0.864
K5VZ53_AGABU	K5XEE1_AGABU	K5VZ53	K5XEE1	Uncharacterized protein.	Uncharacterized protein.	0.959
K5VZ53_AGABU	K5XVE6_AGABU	K5VZ53	K5XVE6	Uncharacterized protein.	MPN domain-containing protein.	0.898
K5VZ53_AGABU	K5Y4W0_AGABU	K5VZ53	K5Y4W0	Uncharacterized protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.983
K5WLP0_AGABU	K5Y4W0_AGABU	K5WLP0	K5Y4W0	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.954
K5X150_AGABU	K5Y4W0_AGABU	K5X150	K5Y4W0	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.954
K5X676_AGABU	K5VQ91_AGABU	K5X676	K5VQ91	TPR_REGION domain-containing protein.	EMC1_C domain-containing protein.	0.997
K5X676_AGABU	K5VZ53_AGABU	K5X676	K5VZ53	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.997
K5X676_AGABU	K5X772_AGABU	K5X676	K5X772	TPR_REGION domain-containing protein.	DUF2012 domain-containing protein.	0.944
K5X676_AGABU	K5X7W5_AGABU	K5X676	K5X7W5	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.856