WH47_07135 protein (Habropoda laboriosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WH47_07135

MAP kinase-activating death domain protein. (1771 aa)

Predicted Functional Partners:

WH47_02810

0.818

WH47_03151

0.731

WH47_12222

0.731

WH47_02804

0.697

WH47_11905

0.666

WH47_00393

0.648

WH47_09983

0.565

WH47_03498

0.519

WH47_01533

0.516

WH47_09159

0.515

Your Current Organism:

Habropoda laboriosa

NCBI taxonomy Id: 597456
Other names: H. laboriosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WH47_00393	WH47_02810	A0A0L7R752	A0A0L7RH55	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Ras-related protein Rab-27A.	0.824
WH47_00393	WH47_03151	A0A0L7R752	A0A0L7QY78	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Biotin biosynthesis bifunctional protein BioHC.	0.789
WH47_00393	WH47_03498	A0A0L7R752	A0A0L7RC30	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab3 GTPase-activating protein non-catalytic subunit.	0.737
WH47_00393	WH47_07135	A0A0L7R752	A0A0L7QQQ0	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	MAP kinase-activating death domain protein.	0.648
WH47_00393	WH47_09983	A0A0L7R752	A0A0L7R3J8	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Ras-related protein Rab-35.	0.736
WH47_00393	WH47_11905	A0A0L7R752	A0A0L7R7W5	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.699
WH47_00393	WH47_12222	A0A0L7R752	A0A0L7RAG5	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Ras-related protein Rab-3.	0.789
WH47_01533	WH47_07135	A0A0L7R0J0	A0A0L7QQQ0	Formin-binding protein 4.	MAP kinase-activating death domain protein.	0.516
WH47_02804	WH47_07135	A0A0L7RHS5	A0A0L7QQQ0	Pleckstrin homology domain-containing family G member 5.	MAP kinase-activating death domain protein.	0.697
WH47_02810	WH47_00393	A0A0L7RH55	A0A0L7R752	Ras-related protein Rab-27A.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.824
WH47_02810	WH47_03151	A0A0L7RH55	A0A0L7QY78	Ras-related protein Rab-27A.	Biotin biosynthesis bifunctional protein BioHC.	0.640
WH47_02810	WH47_07135	A0A0L7RH55	A0A0L7QQQ0	Ras-related protein Rab-27A.	MAP kinase-activating death domain protein.	0.818
WH47_02810	WH47_09983	A0A0L7RH55	A0A0L7R3J8	Ras-related protein Rab-27A.	Ras-related protein Rab-35.	0.508
WH47_02810	WH47_11905	A0A0L7RH55	A0A0L7R7W5	Ras-related protein Rab-27A.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.747
WH47_02810	WH47_12222	A0A0L7RH55	A0A0L7RAG5	Ras-related protein Rab-27A.	Ras-related protein Rab-3.	0.656
WH47_03151	WH47_00393	A0A0L7QY78	A0A0L7R752	Biotin biosynthesis bifunctional protein BioHC.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.789
WH47_03151	WH47_02810	A0A0L7QY78	A0A0L7RH55	Biotin biosynthesis bifunctional protein BioHC.	Ras-related protein Rab-27A.	0.640
WH47_03151	WH47_07135	A0A0L7QY78	A0A0L7QQQ0	Biotin biosynthesis bifunctional protein BioHC.	MAP kinase-activating death domain protein.	0.731
WH47_03151	WH47_09983	A0A0L7QY78	A0A0L7R3J8	Biotin biosynthesis bifunctional protein BioHC.	Ras-related protein Rab-35.	0.613
WH47_03151	WH47_11905	A0A0L7QY78	A0A0L7R7W5	Biotin biosynthesis bifunctional protein BioHC.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.805