STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WH47_00089DNA polymerase subunit gamma-1, mitochondrial. (1204 aa)    
Predicted Functional Partners:
WH47_05096
Twinkle protein, mitochondrial.
   
 
 0.816
WH47_07498
Fanconi anemia group D2 protein.
   
 0.780
WH47_06628
DNA polymerase subunit gamma-2, mitochondrial.
    
 
 0.769
WH47_11058
Ribonuclease H1.
    
 0.751
WH47_08263
Double-strand break repair protein MRE11; Belongs to the universal ribosomal protein uS11 family.
  
 0.747
Fen1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 
 0.702
WH47_00418
Single-stranded DNA-binding protein, mitochondrial.
   
 
 0.698
WH47_12101
DNA repair protein RAD50.
  
 
 0.688
WH47_11209
Fanconi anemia group I protein like protein.
   
 0.671
WH47_10815
Triosephosphate isomerase.
    
 0.665
Your Current Organism:
Habropoda laboriosa
NCBI taxonomy Id: 597456
Other names: H. laboriosa
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