Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AU072_02090TetR family transcriptional regulator. (235 aa)    
Predicted Functional Partners:
AU072_02085
Polyphosphate:nucleotide phosphotransferase, PPK2 family.
       0.821
AU072_02110
Transmembrane protein.
 
     0.622
AU072_19545
Acyl dehydratase.
  
     0.618
AU072_26125
Transmembrane protein.
  
     0.613
AU072_02095
Transmembrane protein.
       0.593
AU072_14705
Secreted protein.
  
     0.577
AU072_02350
DAGKc domain-containing protein.
  
     0.573
AU072_07135
Von Willebrand factor, type A.
  
     0.567
fabG-2
3-ketoacyl-(Acyl-carrier-protein) reductase.
  
     0.562
AU072_02105
Iron-regulated heparin binding hemagglutinin hbhA.
 
     0.552
Your Current Organism:
Mycolicibacterium novocastrense
NCBI taxonomy Id: 59813
Other names: CIP 105546, DSM 44203, JCM 18114, M. novocastrense, Mycobacterium novocastrense, Mycobacterium sp. GA-2613, Mycobacterium sp. GA-2617, Mycobacterium sp. GA-2945b, strain 73
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