STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AU072_03555Cytochrome P450; Belongs to the cytochrome P450 family. (428 aa)    
Predicted Functional Partners:
AU072_16755
Polyketide synthase pks13.
  
 0.978
AU072_10380
annotation not available
  
 0.906
AU072_10395
annotation not available
  
 0.906
AU072_14810
Linear gramicidin synthetase subunit D.
  
 0.906
AU072_22810
Polyketide synthetase mbtC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.904
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.810
AU072_19575
Beta-ketoacyl synthase.
  
 0.773
AU072_22815
Polyketide synthetase mbtD.
  
 0.725
AU072_03545
Cytochrome P450; Belongs to the cytochrome P450 family.
 
    
0.707
AU072_03550
Enoyl-CoA hydratase/carnithine racemase.
       0.620
Your Current Organism:
Mycolicibacterium novocastrense
NCBI taxonomy Id: 59813
Other names: CIP 105546, DSM 44203, JCM 18114, M. novocastrense, Mycobacterium novocastrense, Mycobacterium sp. GA-2613, Mycobacterium sp. GA-2617, Mycobacterium sp. GA-2945b, strain 73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.