Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AU072_05545 | AU072_05550 | Family 3 adenylate cyclase. | Uncharacterized protein. | 0.752 |
AU072_05545 | AU072_05555 | Family 3 adenylate cyclase. | AMP-dependent synthetase and ligase. | 0.730 |
AU072_05545 | AU072_05560 | Family 3 adenylate cyclase. | Dehydrogenase. | 0.730 |
AU072_05550 | AU072_05545 | Uncharacterized protein. | Family 3 adenylate cyclase. | 0.752 |
AU072_05550 | AU072_05555 | Uncharacterized protein. | AMP-dependent synthetase and ligase. | 0.958 |
AU072_05550 | AU072_05560 | Uncharacterized protein. | Dehydrogenase. | 0.763 |
AU072_05555 | AU072_05545 | AMP-dependent synthetase and ligase. | Family 3 adenylate cyclase. | 0.730 |
AU072_05555 | AU072_05550 | AMP-dependent synthetase and ligase. | Uncharacterized protein. | 0.958 |
AU072_05555 | AU072_05560 | AMP-dependent synthetase and ligase. | Dehydrogenase. | 0.848 |
AU072_05555 | AU072_11675 | AMP-dependent synthetase and ligase. | Fatty acid synthase. | 0.782 |
AU072_05555 | AU072_16755 | AMP-dependent synthetase and ligase. | Polyketide synthase pks13. | 0.796 |
AU072_05555 | AU072_19575 | AMP-dependent synthetase and ligase. | Beta-ketoacyl synthase. | 0.844 |
AU072_05555 | AU072_22810 | AMP-dependent synthetase and ligase. | Polyketide synthetase mbtC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.870 |
AU072_05560 | AU072_05545 | Dehydrogenase. | Family 3 adenylate cyclase. | 0.730 |
AU072_05560 | AU072_05550 | Dehydrogenase. | Uncharacterized protein. | 0.763 |
AU072_05560 | AU072_05555 | Dehydrogenase. | AMP-dependent synthetase and ligase. | 0.848 |
AU072_05560 | AU072_11455 | Dehydrogenase. | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.698 |
AU072_05560 | AU072_11675 | Dehydrogenase. | Fatty acid synthase. | 0.951 |
AU072_05560 | AU072_13355 | Dehydrogenase. | Dehydrogenase. | 0.701 |
AU072_05560 | AU072_16755 | Dehydrogenase. | Polyketide synthase pks13. | 0.726 |
page 1 of 4