STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AU072_16655L-rhamnosyltransferase. (319 aa)    
Predicted Functional Partners:
AU072_16660
O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter rfbD.
 
  
 0.995
AU072_16805
Bifunctional UDP-galactofuranosyl transferase glfT.
 
  
 0.995
AU072_16650
O-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter rfbE.
 
  
 0.988
AU072_16810
UDP-galactopyranose mutase glf.
 
 
 0.982
AU072_00885
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.933
AU072_25640
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.933
AU072_16645
Uncharacterized protein.
     
 0.920
AU072_21595
dTDP-RHA:A-D-GlcNAc-diphosphoryl polyprenol-A-3-L-rhamnosyl transferase wbbL1.
  
  
 0.919
AU072_24565
Undecapaprenyl-phosphate alpha-N-acetylglucosaminyltransferaserfe.
  
 
 0.893
AU072_16690
Transmembrane protein.
 
  
 0.835
Your Current Organism:
Mycolicibacterium novocastrense
NCBI taxonomy Id: 59813
Other names: CIP 105546, DSM 44203, JCM 18114, M. novocastrense, Mycobacterium novocastrense, Mycobacterium sp. GA-2613, Mycobacterium sp. GA-2617, Mycobacterium sp. GA-2945b, strain 73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.