STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AU072_20180TetR family transcriptional regulator. (206 aa)    
Predicted Functional Partners:
AU072_20185
DUF2236 domain-containing protein.
 
     0.747
AU072_00640
DUF2236 domain-containing protein.
 
     0.551
AU072_18635
Diacylglycerol O-acyltransferase; Belongs to the long-chain O-acyltransferase family.
  
     0.527
AU072_09900
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.508
AU072_00165
DUF2236 domain-containing protein.
 
     0.499
AU072_05030
DUF2236 domain-containing protein.
 
     0.490
AU072_11890
Uncharacterized protein.
  
    0.479
AU072_20190
S-adenosyl-L-methionine-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
       0.448
AU072_19545
Acyl dehydratase.
  
     0.428
AU072_18215
Alpha/beta hydrolase.
  
     0.420
Your Current Organism:
Mycolicibacterium novocastrense
NCBI taxonomy Id: 59813
Other names: CIP 105546, DSM 44203, JCM 18114, M. novocastrense, Mycobacterium novocastrense, Mycobacterium sp. GA-2613, Mycobacterium sp. GA-2617, Mycobacterium sp. GA-2945b, strain 73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.