STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AU072_21960Two component sensor kinase. (495 aa)    
Predicted Functional Partners:
AU072_06195
Two component system transcriptional regulator.
 
   
 0.937
AU072_21955
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit.
       0.841
AU072_14285
PAS/PAC sensor hybrid histidine kinase.
   
 0.829
AU072_19015
PAS domain-containing protein.
    
 0.829
AU072_16460
Multi-sensor signal transduction histidine kinase.
    
 0.814
AU072_01600
GAF sensor-containing diguanylate cyclase/phosphodiesterase.
    
 0.715
AU072_02420
Transmembrane protein.
   
    0.700
AU072_11880
Thioredoxin reductase.
    
 0.658
whiB-4
Transcriptional regulator WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.637
AU072_00880
GAF domain-containing protein.
    
 0.616
Your Current Organism:
Mycolicibacterium novocastrense
NCBI taxonomy Id: 59813
Other names: CIP 105546, DSM 44203, JCM 18114, M. novocastrense, Mycobacterium novocastrense, Mycobacterium sp. GA-2613, Mycobacterium sp. GA-2617, Mycobacterium sp. GA-2945b, strain 73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.