Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tssEHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)    
Predicted Functional Partners:
KTS01693.1
Protein of avirulence locus ImpE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.996
tssF
Type VI secretion system protein ImpG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
tssG
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
tagH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
KTS01704.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
tssB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
tagF
Protein phosphatase ImpM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.933
tagF-2
Protein phosphatase ImpM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.933
KTS01695.1
PppA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
tssC
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.918
Your Current Organism:
Pantoea dispersa
NCBI taxonomy Id: 59814
Other names: ATCC 14589, CCUG 25232, CIP 103338, DSM 30073, LMG 2603, LMG:2603, P. dispersa
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