STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTS01422.1PppA; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
tagH-2
Type VI secretion system, core protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.945
KTS01420.1
Nuclease PIN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.943
KTS01688.1
Nuclease PIN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.877
tagF-2
Protein phosphatase ImpM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.867
gcvT
Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine.
   
  0.847
tssM-2
Type VI secretion system protein ImpL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
rsmB
16S rRNA methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.831
KTS01426.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.818
KTS01421.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
tagH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.725
Your Current Organism:
Pantoea dispersa
NCBI taxonomy Id: 59814
Other names: ATCC 14589, CCUG 25232, CIP 103338, DSM 30073, LMG 2603, LMG:2603, P. dispersa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.