STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tagH-2Type VI secretion system, core protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)    
Predicted Functional Partners:
KTS01422.1
PppA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.945
sucA
2-oxoglutarate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.936
tagF-2
Protein phosphatase ImpM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.935
KTS01420.1
Nuclease PIN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.933
KTS01426.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.929
tssM-2
Type VI secretion system protein ImpL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.922
KTS01688.1
Nuclease PIN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.847
KTS01421.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.801
KTR98958.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.793
tagF
Protein phosphatase ImpM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
Your Current Organism:
Pantoea dispersa
NCBI taxonomy Id: 59814
Other names: ATCC 14589, CCUG 25232, CIP 103338, DSM 30073, LMG 2603, LMG:2603, P. dispersa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.