STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR98994.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)    
Predicted Functional Partners:
puuR
Transcriptional regulator; Regulates genes involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.727
benE
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.676
KTR98995.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.607
nadR
Transcriptional regulator; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.517
KTR98996.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.515
cobB
NAD-dependent deacetylase; Modulates the activities of several enzymes which are inactive in their acetylated form; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily.
  
    0.514
yjjJ
Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.509
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.481
KTS01203.1
Gamma-glutamyl-gamma-aminobutyrate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.442
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
   
 0.432
Your Current Organism:
Pantoea dispersa
NCBI taxonomy Id: 59814
Other names: ATCC 14589, CCUG 25232, CIP 103338, DSM 30073, LMG 2603, LMG:2603, P. dispersa
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