STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR98229.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)    
Predicted Functional Partners:
KTR98228.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.965
KTR98227.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.957
KTR98230.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.939
KTR98890.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.844
KTR98277.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.844
gsiC
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.841
KTR98560.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.841
KTR99278.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.839
dppB
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.829
KTR99276.1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.827
Your Current Organism:
Pantoea dispersa
NCBI taxonomy Id: 59814
Other names: ATCC 14589, CCUG 25232, CIP 103338, DSM 30073, LMG 2603, LMG:2603, P. dispersa
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