STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR98280.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)    
Predicted Functional Partners:
KTR98283.1
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.572
KTR98281.1
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
       0.568
KTR98282.1
Cytochrome B561; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
KTR98284.1
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
KTR98278.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.455
KTR98279.1
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.454
KTR98277.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
KTR98276.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
KTR98254.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.400
Your Current Organism:
Pantoea dispersa
NCBI taxonomy Id: 59814
Other names: ATCC 14589, CCUG 25232, CIP 103338, DSM 30073, LMG 2603, LMG:2603, P. dispersa
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.