Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KTR97548.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
KTR98769.1
UV damage repair endonuclease UvdE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.529
KTS00072.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
KTR97547.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.511
KTR97546.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.508
KTR97545.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
KTR97544.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
KTR99379.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
lafU
Flagellar motor protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.420
KTS00261.1
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.401
Your Current Organism:
Pantoea dispersa
NCBI taxonomy Id: 59814
Other names: ATCC 14589, CCUG 25232, CIP 103338, DSM 30073, LMG 2603, LMG:2603, P. dispersa
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