STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000799595_06251Unannotated protein. (399 aa)    
Predicted Functional Partners:
GCA_000799595_06252
Unannotated protein.
   
 
 0.967
GCA_000799595_05709
Unannotated protein.
   
 0.887
GCA_000799595_00810
Unannotated protein.
   
 
 0.867
GCA_000799595_03236
Unannotated protein.
 
 0.826
GCA_000799595_06903
Unannotated protein.
  
 
  0.782
GCA_000799595_06902
Unannotated protein.
    
  0.746
GCA_000799595_01399
Unannotated protein.
  
 
  0.740
GCA_000799595_06205
Unannotated protein.
  
 
  0.740
GCA_000799595_06253
Unannotated protein.
       0.707
GCA_000799595_01541
Unannotated protein.
   
  
 0.680
Your Current Organism:
Paenibacillus chondroitinus
NCBI taxonomy Id: 59842
Other names: ATCC 51184, Bacillus chondroitinus, CCUG 28527, CFBP 4265, CIP 103123, DSM 5051, HSCC 176, IFO 15376, JCM 9072, LMG 18040, LMG:18040, NBRC 15376, P. chondroitinus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.