STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000799595_06923Unannotated protein. (990 aa)    
Predicted Functional Partners:
GCA_000799595_05358
Unannotated protein.
  
 
 0.767
GCA_000799595_07544
Unannotated protein.
 
 
 
0.599
GCA_000799595_07162
Unannotated protein.
 
 
 
0.568
GCA_000799595_03094
Unannotated protein.
  
 
 0.564
GCA_000799595_02473
Unannotated protein.
  
     0.515
GCA_000799595_02311
Unannotated protein.
 
  
 
0.511
GCA_000799595_00740
Unannotated protein.
   
  
 0.505
GCA_000799595_02319
Unannotated protein.
   
    0.489
GCA_000799595_05120
Unannotated protein.
 
  
 
0.485
GCA_000799595_02151
Unannotated protein.
  
     0.482
Your Current Organism:
Paenibacillus chondroitinus
NCBI taxonomy Id: 59842
Other names: ATCC 51184, Bacillus chondroitinus, CCUG 28527, CFBP 4265, CIP 103123, DSM 5051, HSCC 176, IFO 15376, JCM 9072, LMG 18040, LMG:18040, NBRC 15376, P. chondroitinus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.