EHD22807.1 protein (Brenneria sp. EniD312) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EHD22807.1

Putative transcriptional regulator, Nlp; KEGG: kpn:KPN_02950 putative cytoplasmic protein. (90 aa)

Predicted Functional Partners:

EHD22808.1

0.776

EHD21524.1

0.751

EHD21554.1

0.736

EHD21544.1

0.731

EHD21547.1

0.731

EHD21559.1

0.731

EHD21520.1

0.729

EHD21551.1

0.721

EHD21558.1

0.713

EHD21549.1

0.705

Your Current Organism:

Brenneria sp. EniD312

NCBI taxonomy Id: 598467
Other names: B. sp. EniD312

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHD21520.1	EHD21524.1	BrE312_2137	BrE312_2141	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	KEGG: ypy:YPK_0212 hypothetical protein.	0.920
EHD21520.1	EHD21544.1	BrE312_2137	BrE312_2161	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	PFAM: Protein of unknown function DUF935; KEGG: cro:ROD_02611 putative phage portal protein.	0.837
EHD21520.1	EHD21547.1	BrE312_2137	BrE312_2164	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	PFAM: Mu-like prophage I protein; KEGG: ecg:E2348C_2662 hypothetical protein.	0.797
EHD21520.1	EHD21549.1	BrE312_2137	BrE312_2166	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	PFAM: Mu-like major head subunit gpT, prophage; KEGG: ecg:E2348C_2664 predicted major head subunit protein.	0.847
EHD21520.1	EHD21551.1	BrE312_2137	BrE312_2168	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	PFAM: Protein of unknown function DUF1320; KEGG: cro:ROD_02541 hypothetical protein.	0.804
EHD21520.1	EHD21554.1	BrE312_2137	BrE312_2171	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	KEGG: lhk:LHK_01152 probable phage sheath protein.	0.777
EHD21520.1	EHD21558.1	BrE312_2137	BrE312_2175	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	PFAM: DNA circulation, N-terminal; KEGG: ypy:YPK_0189 DNA circulation family protein.	0.774
EHD21520.1	EHD21559.1	BrE312_2137	BrE312_2176	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	KEGG: ypy:YPK_0188 putative phage tail protein.	0.788
EHD21520.1	EHD22807.1	BrE312_2137	BrE312_3447	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	Putative transcriptional regulator, Nlp; KEGG: kpn:KPN_02950 putative cytoplasmic protein.	0.729
EHD21524.1	EHD21520.1	BrE312_2141	BrE312_2137	KEGG: ypy:YPK_0212 hypothetical protein.	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	0.920
EHD21524.1	EHD21544.1	BrE312_2141	BrE312_2161	KEGG: ypy:YPK_0212 hypothetical protein.	PFAM: Protein of unknown function DUF935; KEGG: cro:ROD_02611 putative phage portal protein.	0.851
EHD21524.1	EHD21547.1	BrE312_2141	BrE312_2164	KEGG: ypy:YPK_0212 hypothetical protein.	PFAM: Mu-like prophage I protein; KEGG: ecg:E2348C_2662 hypothetical protein.	0.816
EHD21524.1	EHD21549.1	BrE312_2141	BrE312_2166	KEGG: ypy:YPK_0212 hypothetical protein.	PFAM: Mu-like major head subunit gpT, prophage; KEGG: ecg:E2348C_2664 predicted major head subunit protein.	0.816
EHD21524.1	EHD21551.1	BrE312_2141	BrE312_2168	KEGG: ypy:YPK_0212 hypothetical protein.	PFAM: Protein of unknown function DUF1320; KEGG: cro:ROD_02541 hypothetical protein.	0.812
EHD21524.1	EHD21554.1	BrE312_2141	BrE312_2171	KEGG: ypy:YPK_0212 hypothetical protein.	KEGG: lhk:LHK_01152 probable phage sheath protein.	0.773
EHD21524.1	EHD21558.1	BrE312_2141	BrE312_2175	KEGG: ypy:YPK_0212 hypothetical protein.	PFAM: DNA circulation, N-terminal; KEGG: ypy:YPK_0189 DNA circulation family protein.	0.751
EHD21524.1	EHD21559.1	BrE312_2141	BrE312_2176	KEGG: ypy:YPK_0212 hypothetical protein.	KEGG: ypy:YPK_0188 putative phage tail protein.	0.766
EHD21524.1	EHD22807.1	BrE312_2141	BrE312_3447	KEGG: ypy:YPK_0212 hypothetical protein.	Putative transcriptional regulator, Nlp; KEGG: kpn:KPN_02950 putative cytoplasmic protein.	0.751
EHD21544.1	EHD21520.1	BrE312_2161	BrE312_2137	PFAM: Protein of unknown function DUF935; KEGG: cro:ROD_02611 putative phage portal protein.	PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: ypy:YPK_0216 transposase.	0.837
EHD21544.1	EHD21524.1	BrE312_2161	BrE312_2141	PFAM: Protein of unknown function DUF935; KEGG: cro:ROD_02611 putative phage portal protein.	KEGG: ypy:YPK_0212 hypothetical protein.	0.851