STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0010Putative valyl-tRNA synthetase. (90 aa)    
Predicted Functional Partners:
NAMH_0005
Putative general secretion pathway protein F; Identified by match to protein family HMM PF00482.
       0.773
NAMH_0006
General secretion pathway protein E; Identified by match to protein family HMM PF00437.
       0.773
NAMH_0007
Putative GspD; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958.
       0.773
NAMH_0008
Hypothetical protein; Identified by glimmer; putative.
       0.773
NAMH_0009
Putative RNase L inhibitor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
       0.773
NAMH_0011
Hypothetical protein; Identified by glimmer; putative.
       0.553
NAMH_0012
Hypothetical protein; Identified by glimmer; putative.
       0.553
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.