STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0107Putative FOG: EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF02378. (659 aa)    
Predicted Functional Partners:
NAMH_1448
Diguanylate cyclase (ggdef) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.780
NAMH_0147
Ggdef domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.777
NAMH_1527
Ggdef domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.775
NAMH_0084
Ggdef domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
    0.770
NAMH_1114
Sensory box histidine kinase; Identified by match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
    0.770
NAMH_1344
Inner membrane protein YcdT; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.766
NAMH_1279
Ggdef domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
    0.765
NAMH_1156
Diguanylate cyclase; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.761
NAMH_0228
Diguanylate cyclase/phosphodiesterase domain 1; Identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.756
NAMH_1744
Diguanylate cyclase; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
    0.755
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.