STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0147Ggdef domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (467 aa)    
Predicted Functional Partners:
NAMH_1735
Sensory box sensor/ggdef/eal domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
   0.811
NAMH_1437
Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990.
  
   0.805
NAMH_1584
Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990.
  
   0.789
NAMH_0815
Putative diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00563.
  
    0.785
NAMH_0109
Cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF02378.
  
    0.782
NAMH_0107
Putative FOG: EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF02378.
  
    0.777
NAMH_1448
Diguanylate cyclase (ggdef) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
     0.775
NAMH_0149
Hypothetical protein; Identified by glimmer; putative.
       0.773
NAMH_0747
Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
 0.665
NAMH_1510
Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.
 
   0.559
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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