STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0222Conserved hypothetical protein. (183 aa)    
Predicted Functional Partners:
lys
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
       0.551
lys-2
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
       0.551
NAMH_0226
Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229.
 
     0.500
NAMH_1569
Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
      
 0.429
NAMH_0339
Ribonuclease T2 family; Identified by match to protein family HMM PF00445; Belongs to the RNase T2 family.
  
     0.422
NAMH_0958
Hypothetical protein; Identified by glimmer; putative.
  
     0.421
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.