STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0242Pyruvate synthase subunit PorA; Identified by match to protein family HMM PF01855. (405 aa)    
Predicted Functional Partners:
NAMH_0243
PorB subunit of pyruvate:flavodoxin oxidoreductase; Identified by match to protein family HMM PF02775.
 0.999
NAMH_0241
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179.
 
 0.998
NAMH_0240
Pyruvate synthase subunit PorC; Identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175.
 
 0.997
NAMH_1227
OorB subunit of 2-oxoglutarate:acceptor oxidoreductase; Identified by match to protein family HMM PF02775.
 
 0.993
NAMH_0714
ATP-citrate synthase (ATP-citrate (pro-S-)-lyase); An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00549.
  
 
 0.947
NAMH_1019
Biotin/lipoyl attachment; Identified by match to protein family HMM PF00364; match to protein family HMM PF00682.
    
 0.938
NAMH_0774
CoA binding domain protein; Identified by match to protein family HMM PF02629.
  
 0.925
NAMH_0573
Nickel-dependent hydrogenase, large subunit; Identified by match to protein family HMM PF00374.
   
 
 0.918
NAMH_0572
NADH ubiquinone oxidoreductase, 20 kda subunit; Identified by match to protein family HMM PF01058.
   
 
 0.916
NAMH_1008
Hydrogenase; Identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391.
   
 
 0.916
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.