STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0361Chemotaxis protein ec 2.7.3; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. (316 aa)    
Predicted Functional Partners:
NAMH_0362
Chemotaxis protein CheA; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
0.999
NAMH_0019
Putative CheA signal transduction histidine kinase, no good domain identification; Identified by match to protein family HMM PF01627.
 
 
 0.997
NAMH_0356
Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
 
 0.997
NAMH_0679
Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
 
 0.996
NAMH_1064
Mcp-signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
 
 0.996
NAMH_0824
Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376.
 
 0.995
NAMH_1443
Putative mcp-domain signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
 
 0.995
NAMH_0364
Purine-binding chemotaxis protein chew; Identified by match to protein family HMM PF01584.
 
0.993
NAMH_1345
Flagellar protein FliY; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.
 
  
 0.991
NAMH_0503
Diguanylate cyclase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.976
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.