STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0442Conserved hypothetical protein. (722 aa)    
Predicted Functional Partners:
NAMH_0353
Helicase; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
 
   
 0.827
NAMH_0440
Outer membrane lipoprotein; Identified by match to protein family HMM PF05433.
       0.773
NAMH_1652
Oligosaccharyl transferase, STT3 subunit; Identified by match to protein family HMM PF02516.
  
     0.750
atpF-2
ATP synthase B chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.725
NAMH_0433
Hypothetical protein; Identified by glimmer; putative.
 
   
 0.704
NAMH_0071
Putative methyl transferase; Identified by similarity to GB:AAD08298.1.
  
     0.682
NAMH_0435
Putative von Willebrand factor, type A; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
     0.602
NAMH_1229
OorD subunit of 2-oxoglutarate:acceptor oxidoreductase; Identified by match to protein family HMM PF00037.
 
     0.597
NAMH_0438
Conserved hypothetical protein.
 
    0.596
NAMH_0439
ATPase associated with various cellular activities, AAA_3; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.
  
    0.562
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.