STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0630Hydrogenase, EchA subunit; Identified by match to protein family HMM PF00361. (619 aa)    
Predicted Functional Partners:
NAMH_1421
NADH-ubiquinone oxidoreductase; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.
 
 
 0.999
NAMH_1414
Putative NADH dehydrogenase i chain l; Identified by match to protein family HMM PF00361.
 
 
 0.989
NAMH_1061
Carbon monoxide-induced hydrogenase, CooK subunit; Identified by match to protein family HMM PF00146.
 
 
 0.980
nuoH
NADH-quinone oxidoreductase chain 8; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
 
 
 0.977
NAMH_0631
EchB; Identified by match to protein family HMM PF00146.
   
 0.976
NAMH_1415
NADH-quinone oxidoreductase chain m; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
 
 
0.970
NAMH_0635
NADH-ubiquinone oxidoreductase 23 kda subunit; Identified by match to protein family HMM PF00037.
 
 
 0.966
NAMH_1418
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 superfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.958
nuoK
NAD(P)H-quinone oxidoreductase chain 4L (NAD(P)Hdehydrogenase I, chain 4L); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.
  
 
 0.957
NAMH_1422
NADH-ubiquinone oxidoreductase 20 kda subunit; Identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957; Belongs to the complex I 20 kDa subunit family.
  
 
 0.956
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.