STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0749Hydrogenase subunit; Identified by match to protein family HMM PF01058. (166 aa)    
Predicted Functional Partners:
NAMH_0750
Hydrogenase-3, subunit E; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00329; match to protein family HMM PF00346.
 
 
 0.999
NAMH_0753
Formate hydrogenlyase subunit 4.
 
 
 0.989
NAMH_0752
Putative membrane protein.
 
  
 0.971
NAMH_0751
NADH-ubiquinone/plastoquinone (complex i), various chains domain protein; Identified by match to protein family HMM PF00361.
 
 
 0.970
NAMH_0754
Hydrogenase-4 component B; Identified by match to protein family HMM PF00361.
 
 
 0.965
NAMH_1057
Carbon monoxide-induced hydrogenase, large subunit; Identified by match to protein family HMM PF00346.
 
 
 0.903
NAMH_0634
Ech Hydrogenase, Subunit; Identified by match to protein family HMM PF00346.
 
 
 0.891
NAMH_0631
EchB; Identified by match to protein family HMM PF00146.
  
 
 0.820
NAMH_1059
Carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit; Identified by match to protein family HMM PF00037.
  
 
 0.787
NAMH_1421
NADH-ubiquinone oxidoreductase; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.
 
 
 0.783
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.