STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_0853RDD protein; Identified by match to protein family HMM PF06271. (148 aa)    
Predicted Functional Partners:
lptD
Putative periplasmic protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
       0.803
NAMH_0855
Mce related protein; Identified by match to protein family HMM PF02470.
       0.783
NAMH_0858
Polyribonucleotide nucleotidyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01138; match to protein family HMM PF03726.
  
    0.741
purD
Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM PF08442; match to protein family HMM TIGR00877; Belongs to the GARS family.
       0.718
NAMH_0857
Conserved hypothetical protein.
       0.712
NAMH_0856
Identified by match to protein family HMM PF00226.
       0.701
NAMH_1067
S4 domain protein; Identified by match to protein family HMM PF01479.
   
    0.649
NAMH_0851
Hypothetical protein; Identified by glimmer; putative.
       0.506
NAMH_0850
Hypothetical protein; Identified by glimmer; putative.
       0.495
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.