Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NAMH_1007Periplasmic [NiFeSe] hydrogenase large subunit; Identified by match to protein family HMM PF00374. (509 aa)    
Predicted Functional Partners:
NAMH_1008
Hydrogenase; Identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391.
 
 
 0.993
NAMH_0574
Quinone-reactive Ni/Fe-hydrogenase small chain; Identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409.
 
 0.978
NAMH_0572
NADH ubiquinone oxidoreductase, 20 kda subunit; Identified by match to protein family HMM PF01058.
 
 
 0.952
cybH
Ni/Fe-hydrogenase, B-type cytochrome subunit; Identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125.
 
 
 0.950
hybD
Hydrogenase expression/formation protein; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.
 
 
 0.863
NAMH_1009
Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
       0.762
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.662
hypD
Hydrogenase expression/formation protein HypD; Identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; Belongs to the HypD family.
 
 
 0.576
NAMH_1520
Polysulphide reductase, NrfD family; Identified by match to protein family HMM PF03916.
  
  
 0.547
NAMH_1005
Abc transport system ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.542
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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