Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NAMH_0663 | NAMH_1082 | NAMH_0663 | NAMH_1082 | Transformation system protein. | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | 0.594 |
| NAMH_0663 | NAMH_1154 | NAMH_0663 | NAMH_1154 | Transformation system protein. | Identified by match to protein family HMM PF02481. | 0.782 |
| NAMH_0663 | NAMH_1677 | NAMH_0663 | NAMH_1677 | Transformation system protein. | Conserved domain protein; Identified by match to protein family HMM TIGR00426. | 0.488 |
| NAMH_0663 | recA | NAMH_0663 | NAMH_0276 | Transformation system protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.493 |
| NAMH_1082 | NAMH_0663 | NAMH_1082 | NAMH_0663 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | Transformation system protein. | 0.594 |
| NAMH_1082 | NAMH_1085 | NAMH_1082 | NAMH_1085 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | Hypothetical protein; Identified by glimmer; putative. | 0.562 |
| NAMH_1082 | NAMH_1154 | NAMH_1082 | NAMH_1154 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | Identified by match to protein family HMM PF02481. | 0.635 |
| NAMH_1082 | NAMH_1677 | NAMH_1082 | NAMH_1677 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | Conserved domain protein; Identified by match to protein family HMM TIGR00426. | 0.513 |
| NAMH_1082 | dnaB | NAMH_1082 | NAMH_1083 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.803 |
| NAMH_1082 | pheT | NAMH_1082 | NAMH_0908 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.479 |
| NAMH_1082 | recA | NAMH_1082 | NAMH_0276 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.534 |
| NAMH_1085 | NAMH_1082 | NAMH_1085 | NAMH_1082 | Hypothetical protein; Identified by glimmer; putative. | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | 0.562 |
| NAMH_1085 | dnaB | NAMH_1085 | NAMH_1083 | Hypothetical protein; Identified by glimmer; putative. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.562 |
| NAMH_1154 | NAMH_0663 | NAMH_1154 | NAMH_0663 | Identified by match to protein family HMM PF02481. | Transformation system protein. | 0.782 |
| NAMH_1154 | NAMH_1082 | NAMH_1154 | NAMH_1082 | Identified by match to protein family HMM PF02481. | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | 0.635 |
| NAMH_1154 | NAMH_1677 | NAMH_1154 | NAMH_1677 | Identified by match to protein family HMM PF02481. | Conserved domain protein; Identified by match to protein family HMM TIGR00426. | 0.453 |
| NAMH_1154 | recA | NAMH_1154 | NAMH_0276 | Identified by match to protein family HMM PF02481. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.553 |
| NAMH_1677 | NAMH_0663 | NAMH_1677 | NAMH_0663 | Conserved domain protein; Identified by match to protein family HMM TIGR00426. | Transformation system protein. | 0.488 |
| NAMH_1677 | NAMH_1082 | NAMH_1677 | NAMH_1082 | Conserved domain protein; Identified by match to protein family HMM TIGR00426. | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:AAD08401.1. | 0.513 |
| NAMH_1677 | NAMH_1154 | NAMH_1677 | NAMH_1154 | Conserved domain protein; Identified by match to protein family HMM TIGR00426. | Identified by match to protein family HMM PF02481. | 0.453 |
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