NAMH_1271 protein (Nautilia profundicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAMH_1271

Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (141 aa)

Predicted Functional Partners:

NAMH_1274

0.993

NAMH_1799

0.916

NAMH_1316

0.910

NAMH_0441

0.906

NAMH_0656

0.906

NAMH_0679

0.906

NAMH_1064

0.906

NAMH_1443

0.906

NAMH_0537

0.905

NAMH_1009

0.904

Your Current Organism:

Nautilia profundicola

NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NAMH_0441	NAMH_1271	Mcp-domain signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.906
NAMH_0537	NAMH_1271	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.905
NAMH_0656	NAMH_1271	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.906
NAMH_0679	NAMH_1271	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.906
NAMH_1009	NAMH_1271	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.904
NAMH_1064	NAMH_1271	Mcp-signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.906
NAMH_1271	NAMH_0441	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Mcp-domain signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	0.906
NAMH_1271	NAMH_0537	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015.	0.905
NAMH_1271	NAMH_0656	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015.	0.906
NAMH_1271	NAMH_0679	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	0.906
NAMH_1271	NAMH_1009	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	0.904
NAMH_1271	NAMH_1064	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Mcp-signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	0.906
NAMH_1271	NAMH_1274	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.993
NAMH_1271	NAMH_1316	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.910
NAMH_1271	NAMH_1443	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Putative mcp-domain signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.	0.906
NAMH_1271	NAMH_1799	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.916
NAMH_1274	NAMH_1271	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.993
NAMH_1274	NAMH_1316	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.757
NAMH_1274	NAMH_1799	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.913
NAMH_1316	NAMH_1271	Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Methyl-accepting chemotaxis protein/sensory box protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.	0.910

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About