STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (347 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.986
ybbB
tRNA 2-selenouridine synthase; Identified by match to protein family HMM TIGR03167; Belongs to the SelU family.
   
 0.972
NAMH_0812
Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF00282; match to protein family HMM PF01212.
    
 0.915
NAMH_0806
FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992.
     
 0.910
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
     
 0.910
NAMH_1292
Conserved hypothetical protein; Identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527; Belongs to the sulfur carrier protein TusA family.
 
   
 0.875
selB
Selenocysteine-specific translation elongation factor; Identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475.
 
   
 0.854
NAMH_1288
Conserved hypothetical protein; Identified by match to protein family HMM PF02635.
       0.678
NAMH_1291
Identified by match to protein family HMM PF01841; match to protein family HMM TIGR01409.
 
     0.599
NAMH_1290
Conserved hypothetical protein; Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
     
 0.536
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.