STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_1338Identified by match to protein family HMM PF00076. (84 aa)    
Predicted Functional Partners:
NAMH_1421
NADH-ubiquinone oxidoreductase; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.
    
   0.969
NAMH_0765
RNA-metabolising metallo-beta-lactamase; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.
   
 0.959
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.883
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.877
rpoZ
RNA polymerases K / 14 to 18 kDa subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 0.872
NAMH_0542
NADH dehydrogenase.
    
   0.789
NAMH_0567
Hypothetical protein; Identified by glimmer; putative.
    
   0.788
NAMH_1422
NADH-ubiquinone oxidoreductase 20 kda subunit; Identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957; Belongs to the complex I 20 kDa subunit family.
    
   0.785
NAMH_1423
Putative proton-translocating NADH-quinone oxidoreductase, a subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.
    
   0.785
NAMH_1415
NADH-quinone oxidoreductase chain m; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
    
   0.783
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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