STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAMH_1456Hypothetical protein; Identified by glimmer; putative. (407 aa)    
Predicted Functional Partners:
NAMH_1455
Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.
       0.773
glyQ
glycyl-tRNA synthetase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388.
       0.737
NAMH_1458
Protein of unknown function DUF89; Identified by match to protein family HMM PF01937.
       0.736
NAMH_1459
Glutaredoxin; Identified by match to protein family HMM PF00462.
       0.736
NAMH_1460
Conserved hypothetical protein.
       0.736
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.736
NAMH_1462
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
       0.736
NAMH_1463
Conserved hypothetical protein.
       0.736
NAMH_1464
Histidinol phosphatase; Identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; Belongs to the PHP hydrolase family. HisK subfamily.
       0.534
NAMH_1465
Major facilitator superfamily MFS_1; Identified by match to protein family HMM PF07690.
       0.527
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.