STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glyQglycyl-tRNA synthetase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388. (280 aa)    
Predicted Functional Partners:
glyS
glycyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211.
 0.999
NAMH_1462
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
  
    0.832
NAMH_1458
Protein of unknown function DUF89; Identified by match to protein family HMM PF01937.
       0.803
NAMH_1460
Conserved hypothetical protein.
       0.802
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.802
NAMH_1463
Conserved hypothetical protein.
       0.802
NAMH_1459
Glutaredoxin; Identified by match to protein family HMM PF00462.
       0.786
NAMH_1455
Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.
  
    0.775
NAMH_1456
Hypothetical protein; Identified by glimmer; putative.
       0.737
hisS
histidyl-tRNA synthetase; Identified by match to protein family HMM PF00587; match to protein family HMM TIGR00442.
  
  
 0.714
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.